OpsManager upgrade 5.0.17 -- 5.0.21 -- 6.0.17

You should open a support case with MongoDB and have them review the Ops Manager deployment and guide you through the upgrade.

AppDB is something you will have to upgrade manually. You can monitor it with OpsManager but it should not be managed by it.

Ops Manager 6.0 requires MongoDB 4.4 or later for the backing databases, 4.4 is deprecated. But yes updating your backing db should occur first.

Roughly you should.

  1. Consider taking a dump of the AppDB
  2. Upgrade the AppDB 4.2.13-ent → 4.2.24-ent → 4.4.23 → 5.0.19-ent
  3. Upgrade Ops Manager 5.0.17 → 5.0.21 → 6.0.16
  4. Upgrade the AppDB to 6.0.8-ent