There is probably a reason why the docs says it’s not compatible. If you can afford to be offline, then in your situation I would:
- Take one of the node and stop it.
- Take a copy of the data folder (
/db/databy default) and move it to another server. - Upgrade it to 4.0 following the 4.0 upgrade doc.
- Restart the node in 4.0 standalone.
- mongodump the 4.0 node.
- create the new 5.0 or 6.0 (soon!) 3 nodes cluster.
- mongorestore in this new cluster.
I think this would be safe. And in case something goes wrong, you still have your 3.6 nodes completely untouched and safe.
Cheers,
Maxime.